Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., RNA polymerase sigma-54 factor from Ralstonia solanacearum GMI1000

 Score =  331 bits (848), Expect = 4e-95
 Identities = 197/507 (38%), Positives = 298/507 (58%), Gaps = 29/507 (5%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           +K +L+++  Q LA+TP+LQQ+++LLQLS  +  QE+QEAL SNP LE  ++   AP  +
Sbjct: 2   VKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVDDNTGAPP-E 60

Query: 61  SVRMTEESPREPEE--LYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALD 118
           + R  E  P    +    +  P D + L E +  + E +      + + A+ GS      
Sbjct: 61  AARPGEAMPGTEADGATADHSPPDEAPL-ETTTSAIETDPAIAASDEFPADFGS----YT 115

Query: 119 DDAPIYQGE-----------TTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLT 167
              P + G+            T TL+++L  +L     S+ D  +A+ +++A+DD GYL 
Sbjct: 116 SYGPAHHGDGEDSDIGEWVHATPTLREHLRQELLSYRLSERDSLLALTVVEALDDDGYLR 175

Query: 168 VSLEEIQESLRSDDIELD-EIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLE 226
            +L E+      +    + E++     +Q  DP GVA+ +L +CL LQ+   P DT   E
Sbjct: 176 QTLFELMPLAPVESAPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTEAEE 235

Query: 227 E----ARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAE 282
                A+ ++  ++  L  RD   I +     E++LRE   LI+ LDPRPG R +Q HA 
Sbjct: 236 RVQEIAQDIVRSHLPRLAKRDLTHIRRAVGCDEDELREACALIRTLDPRPGLRFSQAHAG 295

Query: 283 YVIPDVSVYKEQGRWLVTINPDSVPKLKINQQYADLM---RGNNAESNYIRTNLQEAKWL 339
           YV+PDV V K +G+W+   NP   P  +IN+ YA+L    RG++     +   LQEA+WL
Sbjct: 296 YVVPDVIVAKIKGKWVAVTNPAVAPCARINKVYAELFAQTRGHHRTP--LAHQLQEARWL 353

Query: 340 IKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKY 399
           I++ + R  T+ +VA+ IV HQ  F EYGE AM+P+VL DVA  + +HESTISR T  K+
Sbjct: 354 IRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMRPLVLRDVAEELGLHESTISRATGNKF 413

Query: 400 MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQ 459
           M TPRGIFE KYFFS  ++TD GG CS+ ++RAL+K+++ AE+   PLSD  +A +LA+Q
Sbjct: 414 MATPRGIFEFKYFFSRQLATDTGGACSAASVRALLKEMIEAEDAQAPLSDVSLAKMLAEQ 473

Query: 460 GIQVARRTIAKYRESLGIAPSSQRKRL 486
           G+ VARRT+AKYR  + IAP+  R+++
Sbjct: 474 GVIVARRTVAKYRGLMRIAPAELRRQI 500