Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., RNA polymerase sigma-54 factor from Dechlorosoma suillum PS

 Score =  407 bits (1046), Expect = e-118
 Identities = 230/497 (46%), Positives = 323/497 (64%), Gaps = 16/497 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MKP+LQLKL Q LA+TPQLQQ+IRLLQLSTL+L+QE+++ L  NPLLE E+   E PS  
Sbjct: 1   MKPTLQLKLSQHLALTPQLQQSIRLLQLSTLELEQELEKYLLENPLLEREDENYE-PSYS 59

Query: 61  ---------SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAE-LEMDTTWDEVYSANT 110
                    +     E PRE +     E  DS    E  + S + L     W    S  +
Sbjct: 60  GSEGEYAGSTAEAAAEGPREGDSGESGEGADSHGPEEVRDDSRDSLGEGEDWFAEGSYPS 119

Query: 111 GSTGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSL 170
            S     D D    Q   T +L+D+L+WQL L   S+ DR +   LI+A+D+ GYLT  L
Sbjct: 120 ASRDEDEDSDFQEVQAANT-SLRDHLNWQLGLMQLSERDRQLVSFLIEALDEDGYLTQPL 178

Query: 171 EEIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEAR 229
           EE+QE+L  + +I+LD+++   + +Q  DP GV +    +CL LQL   P D    ++A 
Sbjct: 179 EELQEALPEELEIDLDDLQIALRHLQHLDPTGVGARTPGECLALQLEALPADEV-RDQAL 237

Query: 230 LLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVS 289
            L+  +++ L  RD+  + K     +E LR +  L++ L+PRPG++ A   A Y+ PDV 
Sbjct: 238 KLVRHHLELLAGRDFTKLKKLLGCDDERLRAVTNLVKSLNPRPGAQYAPLDARYITPDVV 297

Query: 290 VYKEQGRWLVTINPDSVPKLKINQQYADLMRGNNAESNYIRTNLQEAKWLIKSLESRNET 349
           V K + +W  +INPD+ P+L+IN+ YA+++      S  +   LQEA+WLIK+++ R +T
Sbjct: 298 VKKVRNQWTASINPDAYPRLRINRLYAEILSKQRGSS--LSGQLQEARWLIKNVQQRFDT 355

Query: 350 LLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFEL 409
           +L+V++ I++ Q  FFE+GE AM+P+VL ++A  + +HEST+SRVTTQKYM TPRGIFEL
Sbjct: 356 ILRVSQAILDRQRQFFEHGEVAMRPLVLREIAETLGLHESTVSRVTTQKYMATPRGIFEL 415

Query: 410 KYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIA 469
           KYFF SHV+TD GG CS+TAIRALIK+LVAAE+P KPLSDS+I+ +L  QGI VARRTIA
Sbjct: 416 KYFFGSHVATDTGGACSATAIRALIKQLVAAEDPRKPLSDSQISEILGQQGIVVARRTIA 475

Query: 470 KYRESLGIAPSSQRKRL 486
           KYRE+L I+P++ RK +
Sbjct: 476 KYREALNISPANLRKSI 492