Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  597 bits (1539), Expect = e-175
 Identities = 310/494 (62%), Positives = 388/494 (78%), Gaps = 11/494 (2%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK SLQLKLGQQL MTPQLQQAIRLLQLS+L+LQQEIQ+AL+SNPLLE+EE Q +APS  
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPSER 60

Query: 61  SVRMTEESPREPEELYEPEPQDSSDL-----IEKSEISAELEMDTTWDEVYSANTGS-TG 114
              + +    E     +P+ QD+S +     + K  +  EL MDTTWDEV++A+  S +G
Sbjct: 61  KQDLADTDFSETSA--QPQEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSG 118

Query: 115 LALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQ 174
            + +DD P +QGET++ L ++L WQ +LTPFS+ D  IA A+IDAIDD GYLT S E+I 
Sbjct: 119 ASREDDMP-FQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDIL 177

Query: 175 ESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQ 234
           E++ + +IELDE+EAV KRIQ FDP GVA+ +L +CLL+QL+ +  DTP LE AR+L+  
Sbjct: 178 EAMGNPEIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLENARMLIKD 237

Query: 235 YIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQ 294
           ++D +  RD++ ++++TKLKE++LR+ + LIQ L+PRPG  I     EYV+PDVSV K+ 
Sbjct: 238 HLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAVDEEYVVPDVSVSKKN 297

Query: 295 GRWLVTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLK 352
           GRW+V +NPD +PK+ +NQQYA + R   N A+S +IR +LQEAKW IKSLESRNETLLK
Sbjct: 298 GRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAKWFIKSLESRNETLLK 357

Query: 353 VAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYF 412
           VA CIV++Q  FFEYGEEAMKPMVLND+A AVEMHESTISRVTTQKYMHTP+G+FELKYF
Sbjct: 358 VANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYF 417

Query: 413 FSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYR 472
           FSSHV TD+GGECSSTAIRA IKKLVAAEN  KPLSDSK+A LLA+QGI VARRTIAKYR
Sbjct: 418 FSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYR 477

Query: 473 ESLGIAPSSQRKRL 486
           E++ I PS+QRK L
Sbjct: 478 EAMLIPPSNQRKSL 491