Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., RNA polymerase factor sigma-54 from Klebsiella michiganensis M5al

 Score =  605 bits (1559), Expect = e-177
 Identities = 305/491 (62%), Positives = 389/491 (79%), Gaps = 18/491 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK  LQL+L QQLAMTPQLQQAIRLLQLSTL+LQQE+Q+AL+SNPLLE  +  DE     
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEV---- 56

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGS-TGLAL-D 118
                     E +E  + E  D+ D +E+ E+  EL +D +WDE+Y+A T S  G+   D
Sbjct: 57  ----------ETKEAEDRESLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGNGVDYQD 106

Query: 119 DDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178
           D+ P+YQGETTQ+LQDYL WQ++LTPF+D DR IA +++DA+DD GYLT+S+E+I ES+ 
Sbjct: 107 DELPVYQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISVEDIVESIG 166

Query: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
            D+I L+E+EAV KRIQ+FDP GVA+ +L+DCLL+QL+ +  +TPW+EEARL++S ++D 
Sbjct: 167 DDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWIEEARLIISDHLDL 226

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           L N D++++++ T+LKEE L+E + LIQ LDPRPG  I     EYVIPDV V K   RW+
Sbjct: 227 LANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVNDRWV 286

Query: 299 VTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N DS+P+LKINQQYA +     N+A+  +IR+NLQEA+WLIKSLESRN+TLL+V++C
Sbjct: 287 VELNSDSLPRLKINQQYAAMGNSTRNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRC 346

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVE Q  FFE GEE MKPMVL D+A AVEMHESTISRVTTQKY+H+PRGIFELKYFFSSH
Sbjct: 347 IVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           V+T+ GGE SSTAIRAL+KKL+AAENPAKPLSDSK+ T+L+DQGI VARRT+AKYRESL 
Sbjct: 407 VNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLS 466

Query: 477 IAPSSQRKRLL 487
           I PS+QRK+L+
Sbjct: 467 IPPSNQRKQLV 477