Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., RNA polymerase factor sigma-54 from Dyella japonica UNC79MFTsu3.2

 Score =  407 bits (1045), Expect = e-118
 Identities = 234/496 (47%), Positives = 323/496 (65%), Gaps = 23/496 (4%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEEN-------- 52
           MKP LQ +L QQL +TPQLQQAIRLLQLS L+L+ E+++  ESNPLLE  E+        
Sbjct: 1   MKPGLQFRLNQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFSEDAANEGDGE 60

Query: 53  -QDEAPSLDSVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTG 111
              EA S D+      S  + +     EP D S+    S  SAE  +D      +S+  G
Sbjct: 61  SDGEAASFDAPAEAATSANDGDS--GDEPADWSE----SGGSAEEPID------FSSAGG 108

Query: 112 STGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLE 171
           S     D+D    Q    +TLQ++L WQL+LT  S  +RTIA  +IDA++  GYL  +LE
Sbjct: 109 SRSSGGDEDHFEPQNAAPETLQEHLLWQLNLTHLSLRERTIAAIIIDALNADGYLGETLE 168

Query: 172 EIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARL 230
            +  ++ +D    ++E++AVR+++Q+FDP GVASL+L+DCL +QL  +  + P  E A  
Sbjct: 169 SVTAAVPADLKATVEEVDAVRRQVQRFDPTGVASLDLRDCLRVQLEQFDPELPQRELALR 228

Query: 231 LLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSV 290
           ++   ++ L   D   + +  +  EE+      LI+ LDPRPG+ +     EYV PDV  
Sbjct: 229 IVDSELELLARNDIVRLSRRLRASEEETHAATVLIRSLDPRPGAALDVTPVEYVAPDVYA 288

Query: 291 YKEQGRWLVTINPDSVPKLKINQQYADLM-RGNNAESNYIRTNLQEAKWLIKSLESRNET 349
            K+ GRW V++NPD  P+L +NQ Y +L+ +    +++++R  LQEA+WLIKSLESR ET
Sbjct: 289 RKDGGRWRVSLNPDCQPRLGLNQHYCNLIAQARGEDASWMRGQLQEARWLIKSLESRAET 348

Query: 350 LLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFEL 409
           LLKVA+ IV  Q  F +YG EAM P+VL +VA  V MHESTISRVTT+KY+HTPRG FEL
Sbjct: 349 LLKVAEAIVRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYIHTPRGTFEL 408

Query: 410 KYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIA 469
           K+FFSS VST++GG  S+TAI+A+++KL+ AE+P KPLSD  IA  L  +GIQVARRT+A
Sbjct: 409 KHFFSSGVSTEDGGSASATAIQAMLRKLIDAEDPRKPLSDQAIAEELHRKGIQVARRTVA 468

Query: 470 KYRESLGIAPSSQRKR 485
           KYRE++ I  SS+R+R
Sbjct: 469 KYREAMRIPSSSERQR 484