Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., RNA polymerase sigma-54 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  320 bits (821), Expect = 5e-92
 Identities = 189/493 (38%), Positives = 286/493 (58%), Gaps = 37/493 (7%)

Query: 6   QLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLDSVRMT 65
           QLKL QQL MTPQLQQAIRLLQLS L+L + +Q+ L  NP LE  E  DE  +  +   +
Sbjct: 8   QLKLSQQLVMTPQLQQAIRLLQLSRLELVETVQQELLENPFLE--EGMDEGAASSA---S 62

Query: 66  EESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLA------LDD 119
           E S R+ E    PE  D            EL  +  W++       S+  A      L +
Sbjct: 63  EASSRKDESA--PEAYDR-----------ELSRNADWEDYLGEFASSSRQAQVRETELPE 109

Query: 120 DAPIYQGETTQ--TLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESL 177
           +   ++   +   +L+ +L WQL L+  ++  + I   +I  I   GYL  S+E+I E  
Sbjct: 110 EMTAFEARYSARPSLEGHLMWQLRLSRLTEDQKGIGETIIGNIGSSGYLQASVEDIAEMC 169

Query: 178 RSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTT--YPCDTPWLEEARLLLSQY 235
            +D     E+  V   +Q+FDP GVAS   Q+CLL+Q+    Y  D   +E    L+  +
Sbjct: 170 GAD---ASEVIPVLHAVQRFDPVGVASRTPQECLLIQIEMLGYDRDRVLVE----LVRDH 222

Query: 236 IDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQG 295
           ++DL  R YK +L++ KL  +DL+E L +IQ LDP PGS        +V PDV VYK   
Sbjct: 223 LEDLETRRYKPLLRKFKLDMDDLKEYLDIIQSLDPMPGSSFGGSDPMFVSPDVFVYKYDD 282

Query: 296 RWLVTINPDSVPKLKINQQYADLMRG-NNAESNYIRTNLQEAKWLIKSLESRNETLLKVA 354
            +++ +N D +P L+++  Y   + G    + ++++  ++ A WLIKSL  R  TL KV 
Sbjct: 283 EFVIVLNDDGLPHLQLSSLYDQSLAGVTGKDKDFVQEKVRSASWLIKSLYQRQRTLYKVV 342

Query: 355 KCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFS 414
           + I+++Q  FFE G   ++P++L D+A  + MHEST+SR+TT K++ TP G+FELK+FF+
Sbjct: 343 ESIIKYQRGFFEDGVTRLRPLILKDIADDISMHESTVSRITTNKFVATPHGVFELKFFFN 402

Query: 415 SHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQ-GIQVARRTIAKYRE 473
           S +  D+G +  S +++ALIKKL+  ENP +PLSD +I  +L +Q  + +ARRT+AKYR 
Sbjct: 403 SALELDDGSQVGSESVKALIKKLIGEENPKEPLSDERIGEILKEQLQVNIARRTVAKYRT 462

Query: 474 SLGIAPSSQRKRL 486
           ++ I  SS+RK +
Sbjct: 463 AMNIPSSSKRKEV 475