Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Paraburkholderia bryophila 376MFSha3.1

 Score =  384 bits (986), Expect = e-111
 Identities = 225/505 (44%), Positives = 315/505 (62%), Gaps = 20/505 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAP--- 57
           MK SLQL+L Q LA+TPQLQQ+IRLLQLSTL+LQQE+  A+  NPLLE E++   +P   
Sbjct: 1   MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAISQNPLLENEDDWIASPLRV 60

Query: 58  SLDSVRMTEE-SPREPEELYEPEPQDSSDLIEKSEISAELEMDT----TWDEVYSANT-- 110
           + D   +T+  S   P +        SS   E++E      +D     + D    A+   
Sbjct: 61  AADGSLITQAPSSSAPPDQMGGNGSSSSSSSERAENGEPQGVDEYNGLSGDSNGDASQWN 120

Query: 111 ----GSTGLALDDD--APIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYG 164
               G +G A DDD   P+   E++ +L+D+L  QL +T     DR +   LI+++DD G
Sbjct: 121 LDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQAGQRDRALITFLIESLDDDG 180

Query: 165 YLTVSLEEIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTP 223
           YL  +L+E+   L  + +++LDE+ A    +  FDP GV + +  +CL LQL   P  +P
Sbjct: 181 YLAATLDEVLADLPEELEVDLDELNAALALLHSFDPAGVGARSASECLKLQLLRLP-PSP 239

Query: 224 WLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEY 283
               A  +++ Y++ L  RD+  + K  K  ++DLR+   LI+ L+P PG+   +  A+Y
Sbjct: 240 TRTLALEIVAHYLELLAARDFTRLRKHLKANDDDLRDAHMLIRSLEPFPGAAYGKAEADY 299

Query: 284 VIPDVSVYKEQGRWLVTINPDSVPKLKINQQYADLMRGNNAE--SNYIRTNLQEAKWLIK 341
           V+PD+ V K    W   +NP+ VPKL+IN  YA+++R N  +  S  +R  LQEA+WLIK
Sbjct: 300 VVPDIMVRKTAQGWQAELNPEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIK 359

Query: 342 SLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMH 401
           +++ R ET+L+VA+ IVE Q  FF +GE AM+P+VL ++A  + +HEST+SRVTT KYM 
Sbjct: 360 NIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYML 419

Query: 402 TPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGI 461
           TP G  E KYFF SHVSTD GG  SSTAIRALIK+L+ AEN   PLSDS+IA LLA+QG 
Sbjct: 420 TPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENAKTPLSDSRIAELLAEQGF 479

Query: 462 QVARRTIAKYRESLGIAPSSQRKRL 486
            VARRT+AKYRE+L I   + RK L
Sbjct: 480 VVARRTVAKYREALRIPAVNLRKSL 504