Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella sp. ANA-3

 Score =  596 bits (1536), Expect = e-175
 Identities = 309/493 (62%), Positives = 389/493 (78%), Gaps = 9/493 (1%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MK SLQLKLGQQL MTPQLQQAIRLLQLS+L+LQQEIQ+AL+SNPLLE+EE Q +AP+  
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPTER 60

Query: 61  SVRMTE----ESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGS-TGL 115
              + +    E+  +P+E  +    D ++ + K  +  EL MDTTWDEV++A+  S +G 
Sbjct: 61  KQDIADTDFSETTAQPQE-QDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSGA 119

Query: 116 ALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQE 175
           + +DD P +QGET++ L ++L WQ +LTPFS+ D  IA A+IDAIDD GYLT S E+I E
Sbjct: 120 SREDDMP-FQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDILE 178

Query: 176 SLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQY 235
           ++ + +IELDE+EAV KRIQ FDP GVA+ +L +CLL+QL+ +  DTP LE AR+L+  +
Sbjct: 179 AMGNPEIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFALDTPHLENARMLIKDH 238

Query: 236 IDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQG 295
           +D +  RD++ ++++TKLKE++LRE + LIQ L+PRPG  I     EYVIPDVSV K+ G
Sbjct: 239 LDLIAARDFRLLMRKTKLKEDELRESIALIQTLNPRPGLLITPVDEEYVIPDVSVSKKNG 298

Query: 296 RWLVTINPDSVPKLKINQQYADLMRG--NNAESNYIRTNLQEAKWLIKSLESRNETLLKV 353
           RW+V +NPD +PK+ +NQQYA + R   + A+S +IR +LQEAKW IKSLESRNETLLKV
Sbjct: 299 RWVVELNPDCMPKINVNQQYAAMARSTKSQADSQFIRGHLQEAKWFIKSLESRNETLLKV 358

Query: 354 AKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFF 413
           A CIV++Q  FFEYGEEAMKPMVLND+A AVEMHESTISRVTTQKYMHTP+G+FELKYFF
Sbjct: 359 ANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYFF 418

Query: 414 SSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRE 473
           SSHV TD+GGECSSTAIRA IKKLVAAEN  KPLSDSK+A LLA+QGI VARRTIAKYRE
Sbjct: 419 SSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYRE 478

Query: 474 SLGIAPSSQRKRL 486
           ++ I PS+QRK L
Sbjct: 479 AMLIPPSNQRKSL 491