Pairwise Alignments

Query, 179 a.a., lipopolysaccharide transport periplasmic protein LptA from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  108 bits (270), Expect = 5e-29
 Identities = 68/168 (40%), Positives = 99/168 (58%), Gaps = 6/168 (3%)

Query: 16  MKRSHLSLIACLL-ASTQAYALSTDREQPVYIDSDSQQLDMKSNRVTFLGDVKLKQGSIN 74
           MK++++ L + +L  S   +A   D +Q V I + SQ  D+K+N++ F G V++ QGSI 
Sbjct: 1   MKQNNILLASLMLMTSMSTFAKVGDLQQEVKIKAVSQTADIKNNQIIFFGPVEVVQGSIK 60

Query: 75  INADKLIVIR-NAENGKIEEIEGYGNVATFSQLTDEGKTLYGEAKELYYKVRDDELVMIN 133
           INAD+L       EN KI  +   GN AT+SQ+ D+G+     AKE+ Y++    L +  
Sbjct: 61  INADQLRAFSAEGENSKI--LVATGNPATYSQILDDGRPASASAKEIRYEMATRTLTLTG 118

Query: 134 KAMLSQDDSEIRGSKIRYKISLQKLIADSDGKG--RVSTVLQPQAIQE 179
            A L Q  S++ G+ IRY I  QKLIA+S G G  RV T++QP   QE
Sbjct: 119 TATLDQAGSQVTGNLIRYNIIQQKLIAESTGNGDDRVITIIQPDNYQE 166