Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., Protein of unknown function DUF1239 from Pseudomonas syringae pv. syringae B728a

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 46  NLENISYDEQGIRNYVITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSK 105
           N  ++ Y   G   Y +TS  ++H   +  +L   P L +YR G    W + ++RG +S 
Sbjct: 51  NTRSVQYLPDGTLQYDMTSDKVEHVKATDVSLLTTPNLNMYRGGAFP-WHVQSKRGEVSS 109

Query: 106 D-QVLTLYDDVLAKNLLPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMK 164
           D   + L D V  +          +T+S M++  +      D+ V + G    T  + MK
Sbjct: 110 DGDQVELMDSVRVERTDEKQRTTIITSSRMTVFPQKEYAQTDQDVRIDGAGGVTTAKGMK 169

Query: 165 GNFADHSAELYNQVQGRYE 183
               D   +L + V+G+YE
Sbjct: 170 AYLKDSRMDLLSNVRGQYE 188