Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 85.5 bits (210), Expect = 5e-22
 Identities = 48/177 (27%), Positives = 95/177 (53%), Gaps = 3/177 (1%)

Query: 9   VLLLFIASWSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGIRNYVITSIHLD 68
           ++LLF  + +LY+ +  ++ S+ Q+  +++ P +   +L +ISY+ +G     +++ +++
Sbjct: 8   IILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESRVSAAYME 67

Query: 69  HYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSK--DQVLTLYDDVLAKNLLPDSGF 126
           H+     TLF  P+  ++ E    EW +TA+ G L K  D+V+ L D+VL + L  D   
Sbjct: 68  HFDGDAQTLFTQPVYTLFPEDGQGEWRLTAKTGRLDKASDKVM-LEDEVLIEALTIDEPL 126

Query: 127 DTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQGRYE 183
             L TS + + LK+    +DK + + G  F   G  +  +      +L ++++G YE
Sbjct: 127 QQLNTSYLELDLKTMILTSDKEIIISGNNFHLSGHGLYADLNAKEVKLLSKIKGTYE 183