Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 83.2 bits (204), Expect = 2e-21
 Identities = 43/184 (23%), Positives = 98/184 (53%), Gaps = 2/184 (1%)

Query: 3   LSRIVYVLLLFIAS-WSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGIRNYV 61
           ++R+   ++ F  +   LY+ +  ++ S+     N++ P +   +L+++ Y+++G  N  
Sbjct: 1   MNRVTLAIIAFFGTALILYWQVQSKKGSEELALDNVDRPDYIVRDLKSVQYNDEGGINSR 60

Query: 62  ITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQ-VLTLYDDVLAKNL 120
           +++ H++HYA+   T F  PI  VY +    +W + + +G L K+   +TL ++V+   +
Sbjct: 61  VSASHMEHYAERNQTYFTQPIYLVYPDNGDAQWRLRSTKGTLDKNSGRVTLENNVIIDAI 120

Query: 121 LPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQG 180
            P+    T+ T+ + + L +    +D+ + + G  F   G+ +  +    + +L +QV+G
Sbjct: 121 SPEEPIQTIETTYLELDLNTMIMTSDRSIRITGRDFLITGEGLYADLNAQNIKLTSQVEG 180

Query: 181 RYET 184
            YET
Sbjct: 181 TYET 184