Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.0 bits (193), Expect = 5e-20
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 9/187 (4%)

Query: 3   LSRIVYVLLLFIAS-----WSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGI 57
           +SR+   ++ F  +     W +    G + D  +    N + P +  E+L +I ++EQG 
Sbjct: 1   MSRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLN---NSDRPDYIIEDLRSIEFNEQGQ 57

Query: 58  RNYVITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQ-VLTLYDDVL 116
            N  +T+ H++HY     T F  P+  VY +    +W+I A  G L+K+   + L ++V+
Sbjct: 58  VNSRVTAKHMEHYELKNQTDFTQPVYLVYPDQGKAKWQIRADLGRLNKETGKVVLENNVI 117

Query: 117 AKNLLPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYN 176
              + P     TL+TS + + L +    +D+ + + G  F   GQ +  +      +L +
Sbjct: 118 IDAINPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQGQGLYADLNAQEVQLTS 177

Query: 177 QVQGRYE 183
           QV G YE
Sbjct: 178 QVVGTYE 184