Pairwise Alignments

Query, 187 a.a., LPS export ABC transporter periplasmic protein LptC from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 82.4 bits (202), Expect = 4e-21
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 3   LSRIVYVLLLFIAS-----WSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGI 57
           +SR+   ++ F  +     W +    G + D  + V+   + P +  E+L +I ++EQG 
Sbjct: 1   MSRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVS---DRPDYIIEDLRSIEFNEQGQ 57

Query: 58  RNYVITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQ-VLTLYDDVL 116
            N  +T+ H++HY     T F  P+  VY +    +W+I A +G L+KD   + L ++V+
Sbjct: 58  VNSRVTAKHMEHYELKNQTDFTEPVYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVI 117

Query: 117 AKNLLPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYN 176
              + P     TL+TS + + L +    +D+ + + G  F   GQ +  +      +L +
Sbjct: 118 IDAISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQGQGLYADLNAQEVQLTS 177

Query: 177 QVQGRYE 183
           QV G YE
Sbjct: 178 QVVGTYE 184