Pairwise Alignments

Query, 258 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., conserved hypothetical integral membrane protein from Pseudomonas stutzeri RCH2

 Score =  332 bits (850), Expect = 6e-96
 Identities = 172/255 (67%), Positives = 202/255 (79%)

Query: 4   VSSVGQRTLAVSETFGRASLMLFGALVGRPQPIRHFPLLVRQLYSIGVQSLAIIIVSGLF 63
           V+ +G+  L V    GR+++ L  AL GR      F LLV+QLYS+GV SLAI++VSG+F
Sbjct: 10  VALLGRAGLDVLAALGRSTIFLVHALFGRSGLRNGFSLLVKQLYSVGVLSLAIVVVSGIF 69

Query: 64  IGMVLSLQGYVILVDYGAETSLGQMVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKA 123
           IGMVL+LQGY IL  YG+E ++GQMVAL+LLRELGPVVTALLFAGRAGSAL AEIG MK+
Sbjct: 70  IGMVLALQGYNILSSYGSEQAVGQMVALTLLRELGPVVTALLFAGRAGSALAAEIGNMKS 129

Query: 124 TEQLSSLEMMAVDPLKRVIAPRFWAGVISMPLLAMIFMAVGIWGGQLVGVDWKGIDHGSF 183
           TEQLSSLEM+ VDPLK +IAPR WAG IS+PLL +IF  VGIWGG +V VDW G+  GSF
Sbjct: 130 TEQLSSLEMIGVDPLKYIIAPRLWAGFISLPLLTLIFNVVGIWGGAMVAVDWLGVYEGSF 189

Query: 184 WSAMQASVELGQDIGNSTIKCVVFAFTVTWIALFNGYDAIPTSEGISRATTRTVVHSSLA 243
           W+ MQ SV    D+ N  IK VVFA  VTWIA+F GYD  PTSEGISRATTRTVV++SLA
Sbjct: 190 WANMQNSVNFHSDVLNGVIKSVVFALVVTWIAVFQGYDCEPTSEGISRATTRTVVYASLA 249

Query: 244 VLGLDFVLTALMFGN 258
           VLGLDF+LTALMFG+
Sbjct: 250 VLGLDFILTALMFGD 264