Pairwise Alignments

Query, 258 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  348 bits (893), Expect = e-101
 Identities = 181/254 (71%), Positives = 211/254 (83%)

Query: 4   VSSVGQRTLAVSETFGRASLMLFGALVGRPQPIRHFPLLVRQLYSIGVQSLAIIIVSGLF 63
           ++ +G+  +      GRA LML+GA+   P+  +  PLL++QLY IGVQS+ II+VSGLF
Sbjct: 7   IARLGRGAIDSVTGLGRAGLMLWGAIAKIPRVRKGTPLLIKQLYVIGVQSMVIILVSGLF 66

Query: 64  IGMVLSLQGYVILVDYGAETSLGQMVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKA 123
           IGMVL+LQGY ILV +G E SLG MVALSLLRELGPVVTALLFAGRAGSALTAEIGLMK+
Sbjct: 67  IGMVLALQGYNILVGFGTEDSLGPMVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKS 126

Query: 124 TEQLSSLEMMAVDPLKRVIAPRFWAGVISMPLLAMIFMAVGIWGGQLVGVDWKGIDHGSF 183
           TEQLSSLEMMA+DPL++VIAPRFWAGVIS+PLLA++F AVGI+GG LVGV+WKGID GSF
Sbjct: 127 TEQLSSLEMMAIDPLRQVIAPRFWAGVISLPLLALMFTAVGIYGGHLVGVEWKGIDSGSF 186

Query: 184 WSAMQASVELGQDIGNSTIKCVVFAFTVTWIALFNGYDAIPTSEGISRATTRTVVHSSLA 243
           WS +QASVE  QDI N  IK +VFA  VTWIAL+ GY  IP  EGISRATT+TVV SSLA
Sbjct: 187 WSILQASVEWRQDIVNCLIKSLVFAVVVTWIALYRGYHVIPNPEGISRATTQTVVQSSLA 246

Query: 244 VLGLDFVLTALMFG 257
           VL LDF+LTA+MFG
Sbjct: 247 VLALDFLLTAMMFG 260