Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 948 a.a., RNA polymerase associated protein RapA (EC 3.6.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  898 bits (2321), Expect = 0.0
 Identities = 485/962 (50%), Positives = 645/962 (67%), Gaps = 25/962 (2%)

Query: 6   GQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVDSQQ 65
           GQRWISD+E++LGLGTV+A D R +T+++ A+ + R YA  +AP+TRV F+ GDV+   +
Sbjct: 8   GQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPGDVITHFE 67

Query: 66  GWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDRMDN 125
           GW + V +V +  G+  Y G     E   V L E  LSN I+F    D+LFAGQID +  
Sbjct: 68  GWKMTVREVDDIDGLLVYHGLNGQNEV--VTLPETQLSNFIQFRLASDRLFAGQIDPLAW 125

Query: 126 FVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTI 185
           F LRY  L +  +Q +S + GL G+RA  I HQL+IA EV  R APRVLLADEVGLGKTI
Sbjct: 126 FSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTI 185

Query: 186 EAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEADNP 245
           EAG++IH+Q+L+GRA R+LI+VPE LQHQWLVEM RRFNL  ++FDEER +E  S+A NP
Sbjct: 186 EAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIE--SDASNP 243

Query: 246 FETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQ 305
           FE  Q  L +L++L    +  +    A WDL+VVDEAHHL WH ++ S +Y ++E LAE 
Sbjct: 244 FEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPQYALVEQLAET 303

Query: 306 TPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKL 365
            PGVLLLTATPEQLG++SHFARLRLLD +RF+D +AF  E E Y PVA+AV  L    +L
Sbjct: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAEAVQELLDKGRL 363

Query: 366 SDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLFRNTRA 425
           S EA   I   L  +      +AL +  S+ ++  A   L+  L+DRHGTGRVLFRNTRA
Sbjct: 364 SPEAHKTIQGFLGNEG-----EALLTAVSDGDVE-ASARLVRELLDRHGTGRVLFRNTRA 417

Query: 426 AIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE--GEE 483
           A++GFP R +H  PL  P++Y         LG    PE      LYPE  FQ      EE
Sbjct: 418 AVQGFPERKLHAYPLPCPAEYLELP-----LGDH--PE------LYPEVSFQAQPDASEE 464

Query: 484 SSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSII 543
             WW+FD RV WL++ +K  +  K+LVI + A TA+ LE ALR R GI ATVFHEGM+I+
Sbjct: 465 ERWWRFDPRVEWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNIL 524

Query: 544 ERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
           ERD+AAAYFA EE GAQVLICSEIGSEGRNFQFA+ LV+FDLP +PDLLEQRIGRLDRIG
Sbjct: 525 ERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIG 584

Query: 604 QKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGGGEE 663
           QK  I+++ PYL  + QA L +W+ E LNAF  TCPTG A+   F  RL+P+L      +
Sbjct: 585 QKHTIELHAPYLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGQ 644

Query: 664 LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFALSL 723
            + +I+E+    + L+++L  GRDRLLE++S G  +   + E I + D    L  +  +L
Sbjct: 645 WQALIDEARTERERLEAELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETL 704

Query: 724 FDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISWEHP 783
           FDA G+  ED  ENAL++ P+E M+  S+P    EG TIT+DR+ ALSREDM FI+WEHP
Sbjct: 705 FDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHP 764

Query: 784 MVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVSPIR 843
           MVQGG+DL++S  +G  AV+L+KNKAL  GT+LLEL+YV +  AP+   + R+LP + +R
Sbjct: 765 MVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALR 824

Query: 844 ILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPRVSAI 903
            L+DA GNDL+++V FE+ N QL  V R  A+K + + +  +   I A E  + PR +  
Sbjct: 825 CLLDANGNDLAARVSFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPRHAER 884

Query: 904 REQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDSLRL 963
             +AQR +    + EL RL AL+AVNP +RD E+  L QQ ++    + +A  +L+++R+
Sbjct: 885 VAEAQRRLAADTDEELARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRV 944

Query: 964 IV 965
           +V
Sbjct: 945 LV 946