Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 493 VNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYF 552
           V+WLL    A  + K  VI +               EG++A V H      ++D+  A  
Sbjct: 234 VHWLL----ANETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKD--QKDRKLAID 287

Query: 553 AQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
             +EGG +VL+ +++ + G + +  + ++ FD+P + D    RIGR  R G
Sbjct: 288 RVKEGGVKVLVATDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAG 338