Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 967 a.a., helicase (Snf2/Rad54 family) from Xanthomonas campestris pv. campestris strain 8004

 Score = 92.8 bits (229), Expect = 1e-22
 Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 13/223 (5%)

Query: 133 LTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPR-VLLADEVGLGKTIEAGMII 191
           LT + +   +  R L   R  + PHQ+  A    +      VLLADEVGLGKTIEAG+++
Sbjct: 35  LTLRSRDESAVARALSAARVDMNPHQVDAALFALKSPVEAGVLLADEVGLGKTIEAGLVL 94

Query: 192 HQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEAD--NPFETQ 249
            Q     R  R+L++VP TL+ QW  E+  +F L  S+  E +   AF + D  NPF+ +
Sbjct: 95  AQH-WAQRRRRLLLIVPATLRKQWTQELEEKFQLP-SVILESKSFNAFRQLDVSNPFQIE 152

Query: 250 QYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQTPG- 308
             ++ +      S+Q+  +     WDL+V+DEAH L    +  S   + + AL E   G 
Sbjct: 153 DAIIVTSYEFAASKQK--ELAAVSWDLVVLDEAHKLRNLYKGKSASKRAV-ALNEALRGR 209

Query: 309 -VLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYA 350
             +LLTATP Q      +  +  +  + F   +AF   + QYA
Sbjct: 210 RKVLLTATPFQNSLMELYGLVSFISDEFFGSQKAF---QMQYA 249



 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 537 HEGMSIIE----RDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLL 592
           H G +++      D  AA          VLI +E G EG N QF + LV +DLP+NP  +
Sbjct: 497 HAGSTLVSGSRTADMKAAVVEAFRDHRDVLITTEAGGEGINLQFCSLLVNYDLPWNPQRV 556

Query: 593 EQRIGRLDRIGQKRDIDVYVPYLTETSQA 621
           EQRIGR+ R GQK D+ V V ++   ++A
Sbjct: 557 EQRIGRIHRYGQKSDV-VVVNFVNRKNRA 584