Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1065 a.a., COG0553: Superfamily II DNA/RNA helicases, SNF2 family from Xanthomonas campestris pv. campestris strain 8004

 Score = 50.4 bits (119), Expect = 6e-10
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 9/130 (6%)

Query: 492  RVNWLLEKVKAKRS--EKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAA 549
            ++ WL+EK++  ++  EK++V          +++A+  R   +A++ +   S+      +
Sbjct: 888  KLAWLIEKLQEIQATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDS 947

Query: 550  ------AYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
                  A+ A+ + G  VL  + +G  G N Q AN ++ F  P+NP   +Q   R  RIG
Sbjct: 948  RQIIIDAFQAKPDFGVIVLSTTAVGF-GVNIQAANHVIHFTRPWNPAKEDQATDRAYRIG 1006

Query: 604  QKRDIDVYVP 613
            Q++++ VY P
Sbjct: 1007 QEKEVFVYYP 1016



 Score = 37.0 bits (84), Expect = 7e-06
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 24/150 (16%)

Query: 173 VLLADEVGLGKTIEAGMIIHQQVLTGRAER-ILIVVPETLQHQWLVEMMR----RFNLHF 227
           VLLAD++GLGKT++A  ++     T  A +  LIV P +L   W  E+ +    R     
Sbjct: 588 VLLADDMGLGKTLQALTLMAWYRQTAPAPKPCLIVAPVSLLENWKAEIAKFLDGRQGATL 647

Query: 228 SIFDEERCVEAFSEADNPFETQQ----------------YVLCSLDFLRKSRQRFEQALE 271
           +++ E   +   S  +   E ++                +VL + + LR    +   A E
Sbjct: 648 TLYGEHLALHRLSAREIGPELRELGVKKALNPGFAHGAAFVLTTYETLRD--YQLSMARE 705

Query: 272 AEWDLLVVDEAHHLEWHPEKPSREYQVIEA 301
            +W +LV DEA  ++      +R  + ++A
Sbjct: 706 -KWGVLVCDEAQKIKTPSAMVTRSAKAMQA 734