Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

 Score = 47.0 bits (110), Expect = 4e-09
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 31/229 (13%)

Query: 486 WWQFD-SRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIE 544
           WW     +++ L   ++ +  + +++ A   +   +L Q L+ R G+ A   +  M    
Sbjct: 228 WWVSGLHKLDALTRILEVEPFDGMIIFARTKAATEELAQKLQAR-GLAAAAINGDMQQAA 286

Query: 545 RDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQ 604
           R+K  A    ++G   +L+ +++ + G + +  + ++ +D+P++ +    RIGR  R G+
Sbjct: 287 REKTIAQL--KDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGR 344

Query: 605 KRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDA----FAERLIPILAAGG 660
             D  ++V    +     + R  ++ +       P+  AV D     F  R+   LA G 
Sbjct: 345 NGDAILFVTPREKGMLRAIERATRQPIEEM--QLPSVDAVNDTRVARFMTRITETLAGG- 401

Query: 661 GEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAK 709
                               Q+E+ RD L    S     A  IA  +AK
Sbjct: 402 --------------------QIEMYRDLLQRYESENNVPAIDIAAAMAK 430