Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 948 a.a., SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit from Pseudomonas syringae pv. syringae B728a

 Score =  896 bits (2315), Expect = 0.0
 Identities = 482/962 (50%), Positives = 640/962 (66%), Gaps = 25/962 (2%)

Query: 6   GQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVDSQQ 65
           GQRWISD+E++LGLGTV+A D R +T+++ A+ E R YA  +AP+TRV F+ GDV+   +
Sbjct: 8   GQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDVITHFE 67

Query: 66  GWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDRMDN 125
            W + V +V +  G+  Y G     E   V L E  LSN I+F    D+LFAGQID++  
Sbjct: 68  NWKMTVREVDDVDGLLVYHGLNAQNEL--VTLPETQLSNFIQFRLATDRLFAGQIDQLSW 125

Query: 126 FVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTI 185
           F LRY  L +  +Q +S + GL G+RA  I HQL+IA EV  R APRVLLADEVGLGKTI
Sbjct: 126 FSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTI 185

Query: 186 EAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEADNP 245
           EAG++IH+Q+L+GRA R+LI+VPE LQHQWLVEM RRFNL  ++FD ER +E  S+A NP
Sbjct: 186 EAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFME--SDAGNP 243

Query: 246 FETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQ 305
           FE  Q  L +L++L +  +  +    A WDL+VVDEAHHL WH +K SREY ++E LAE 
Sbjct: 244 FEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQLAEV 303

Query: 306 TPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKL 365
             GVLLLTATPEQLG++SHFARLRLLD +RF+D +AF  E E Y PVA AV  L    KL
Sbjct: 304 IAGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDKGKL 363

Query: 366 SDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLFRNTRA 425
           S  A+  I   L  +  + L  A+ +   E     A+  LI  L+DRHGTGRVLFRNTRA
Sbjct: 364 SAAAQETIHGFLGAEG-DSLLAAVNTGDEE-----AKSRLIRELLDRHGTGRVLFRNTRA 417

Query: 426 AIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE--GEE 483
           A++GFP R +H  PL  P +Y             L         LYPE  FQ      EE
Sbjct: 418 AVQGFPERKLHQYPLPCPVEY-------------LELPVGEHADLYPEVSFQSHSDVSEE 464

Query: 484 SSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSII 543
             WW+FD RV+WL++ +K  +  K+LVI + A TA+ LE ALR R GI ATVFHEGM+I+
Sbjct: 465 ERWWRFDPRVDWLIDTLKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNIL 524

Query: 544 ERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
           ERD+AAAYFA EE GAQVLICSEIGSEGRNFQF++ LV+FDLP +PDLLEQRIGRLDRIG
Sbjct: 525 ERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIG 584

Query: 604 QKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGGGEE 663
           QK  I+++VP+L  + QA L +W+ E LNAF  TCPTG A+   F  RL+P+L +G  ++
Sbjct: 585 QKHTIELHVPFLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESGDDDK 644

Query: 664 LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFALSL 723
            + +I E+    + L+S+L  GRDRLLE++S G  + + + E I   D   +L  +  +L
Sbjct: 645 WQTLINEARSERERLESELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETL 704

Query: 724 FDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISWEHP 783
           FDA G+  ED  ENAL++ P+E M+  S+P    EG TIT+DR+ ALSREDM FI+WEHP
Sbjct: 705 FDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHP 764

Query: 784 MVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVSPIR 843
           MVQGG+DL++S  +G  AV+L+KNKAL  GT+LLEL+YV +  AP+   + R+LP + +R
Sbjct: 765 MVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALR 824

Query: 844 ILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPRVSAI 903
            L+D  GNDL+S+V F + N QL  V R  A+K + + +  +   I A E  + P+ +  
Sbjct: 825 CLLDPNGNDLASRVSFNTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPKHAER 884

Query: 904 REQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDSLRL 963
             +AQR +      EL RL AL+AVNP +RD E+  L  Q ++    + +A  +L+++R+
Sbjct: 885 VAEAQRRLAADTEEELARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRV 944

Query: 964 IV 965
           +V
Sbjct: 945 LV 946