Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 493 VNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYF 552
           +NWLL     +  +K ++  +  + A +L   L   E  +A V H      ++D+ AA  
Sbjct: 234 LNWLLAN---ETYQKAIIFTNTKAMADRLYGRLVALE-YKAFVLHGDKD--QKDRKAAID 287

Query: 553 AQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
             ++GGA++++ +++ + G + +  + ++ FD+P + D    R+GR  R G
Sbjct: 288 RLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAG 338