Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1170 a.a., helicase from Sinorhizobium meliloti 1021

 Score =  135 bits (339), Expect = 2e-35
 Identities = 150/563 (26%), Positives = 227/563 (40%), Gaps = 75/563 (13%)

Query: 143 PMRGLCGMRAGLIPHQLYIAHEVGRRHAP-RVLLADEVGLGKTIEAGMIIHQQVLTGRAE 201
           PM  +       +PHQ+   +E      P R +LAD+ G GKTI AG+ I + ++   + 
Sbjct: 93  PMMAVHSSNVEPLPHQITAVYESLLPRQPLRFVLADDPGAGKTIMAGLYIRELIMRADSH 152

Query: 202 RILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRK 261
           RILIV P +L  QW  E+  +F L F ++     +E  S + NPFE    ++  LD + +
Sbjct: 153 RILIVAPGSLVEQWRDELHEKFGLEFYVYSS--LLEQTSPSGNPFEDYPRLIVRLDQISR 210

Query: 262 SRQRFEQALEAEWDLLVVDEAHHLEWH-----PEKPSREYQVIEALAEQTPGVLLLTATP 316
           + +  ++     WDL V DEAH L  H      EK  R ++  E L      +LL+TATP
Sbjct: 211 NEELQDKLCAPGWDLAVFDEAHKLSAHYFGSKLEKTGR-FRFAEKLGAHVRHLLLMTATP 269

Query: 317 EQLGRESHFARLRLLDADRFYD--------------YEAFVKEE---------------- 346
                E     L LLD+DRFY                   VKEE                
Sbjct: 270 HNGKEEDFQLFLSLLDSDRFYGKFRDGVHKVDASDLMRRMVKEELVKFDGTPLFPERKAY 329

Query: 347 ---EQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIAL--- 400
               + +P+  A+    +    ++  K    E   +  V     AL+   +    A+   
Sbjct: 330 TVNYELSPIEAALYEAVTNYVQTEMGKADQLEGARKGSVGFALTALQRRLASSPEAIFQS 389

Query: 401 --ARQELIDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSM---RVAGM 455
              R+E ++N +     G +  RN  A        +   L  E       ++     A  
Sbjct: 390 LKRRRERLENRLRDEKLG-IKGRNALAETYATAPEDEDELSAEEQESLEENLIDDATAAK 448

Query: 456 LGGKLTPEARAMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRA 515
              +L  E   +K L  +       G++  W +    +    E   A   ++ ++I S  
Sbjct: 449 TVAELEAEIVILKGLEAQAKSVVASGQDRKWDELSRILQNNPEMRDASGRQRKIIIFSEH 508

Query: 516 STALQLEQA-----LREREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSE 570
              L   QA     L   + I     H G    ER +  A F + +   +VL+ ++   E
Sbjct: 509 RDTLNYLQARIAGVLGNPDAI--VTIHGGTHRDERRRLQALF-RSDLDVRVLVATDAAGE 565

Query: 571 GRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQ-------------KRDIDVYVPYLTE 617
           G N Q AN +V +DLP+NP+ LEQR GR+ RIGQ              R+ DVY   L +
Sbjct: 566 GVNLQNANLMVNYDLPWNPNRLEQRFGRIHRIGQTEVCHLWNLVAKETREGDVYHRLLLK 625

Query: 618 ---TSQAILARWFQEGLNAFAET 637
               SQA+  R F      F ET
Sbjct: 626 LEVESQALHGRVFDILGEVFEET 648