Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 967 a.a., ATP-dependent helicase HepA (RefSeq) from Shewanella amazonensis SB2B

 Score = 1173 bits (3035), Expect = 0.0
 Identities = 574/970 (59%), Positives = 754/970 (77%), Gaps = 4/970 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           MSFA+GQRWISDTES+LGLGTVV ++ R VTL+F A+ ENR++A ++AP+TRVI+N GD 
Sbjct: 1   MSFAVGQRWISDTESELGLGTVVQIEGRMVTLLFPATGENRMFAMAEAPLTRVIYNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           +DS +GW + V++V E  G+  YLG R DT E  + LRE  L + IRFNKPQD+L+AGQI
Sbjct: 61  IDSAEGWGMTVDKVEELNGLVFYLGKRTDTGEDTM-LRETLLEHNIRFNKPQDRLYAGQI 119

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DR++ F +RY+A   +++Q  SP+ GL G R GLIPHQL+IAHEVGRRHAPRVLLADEVG
Sbjct: 120 DRIERFGVRYKAQLLRHKQATSPLLGLQGPRVGLIPHQLWIAHEVGRRHAPRVLLADEVG 179

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAG+IIHQQ++TGRAER+L++VP+TL+HQWLVEM+RRFNL FS+FDE+RCVEAF+
Sbjct: 180 LGKTIEAGLIIHQQLMTGRAERVLVIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFA 239

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           + DNPF T+Q V+CSL+ LRK R R EQAL+A+WDL+VVDEAHHLEW  ++PSR YQV+E
Sbjct: 240 DHDNPFYTEQLVICSLELLRKKR-RLEQALDADWDLMVVDEAHHLEWSEDEPSRAYQVVE 298

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
           ALAE  PGVLLLTATP+QLG +SHFARLRLLD DRFYDY+AF+ EE+ Y  VA+A  AL 
Sbjct: 299 ALAEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLDEEKGYQAVAEAADALA 358

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVL 419
           SG KLSDEA N +TELLSE+D+ P  + +++   ++E+   AR EL+  L+DRHGTGRVL
Sbjct: 359 SGIKLSDEAINGLTELLSEKDIAPAIRQIQAENLDEELRQAARDELLQELLDRHGTGRVL 418

Query: 420 FRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEF 479
           FRN+RA++KGFP R  H    E+P QY T+MRV  M+GG  T EAR  + L PE I+QEF
Sbjct: 419 FRNSRASVKGFPKREFHSHGFELPEQYVTAMRVNAMMGGARTQEARVAQALSPERIYQEF 478

Query: 480 EGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEG 539
           +   +SWW+FD RV+WL++ +K+ RS+K+LVIASRA TAL LE+ALR REGI+ATVFHEG
Sbjct: 479 DDNNASWWKFDPRVDWLIDFLKSHRSKKVLVIASRAETALALEEALRTREGIQATVFHEG 538

Query: 540 MSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRL 599
           MSIIERDKA AYFAQEEGGAQ LICSEIGSEGRNFQFA+QLV+FDLP NPDLLEQRIGRL
Sbjct: 539 MSIIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASQLVLFDLPLNPDLLEQRIGRL 598

Query: 600 DRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAG 659
           DRIGQ+ D+ +++P+L  T+Q  L  W+ EGL AF  TCP G  ++  F ERL+ +L  G
Sbjct: 599 DRIGQRHDVQIHLPFLKHTAQEQLMHWYHEGLCAFELTCPGGHVLFGEFKERLLSVL-TG 657

Query: 660 GGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             +EL+ ++ ++    K LK+ +E GRD+LLE++S+GG KA+ I   ++  D DT+L+  
Sbjct: 658 ESDELDELMADTKARYKALKAAMEQGRDKLLELNSHGGAKAEAITASLSDADEDTDLIAS 717

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
            + L+D IG+ Q+D+GEN++V+   EHMM P+YPGL  +G T+TFDR+TALSR+D+  I+
Sbjct: 718 VIRLWDVIGIDQDDKGENSIVLRTTEHMMYPTYPGLNEDGVTVTFDRNTALSRDDIALIT 777

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
            EHP+VQ G+DL+     GT  V+LLKNKALP GTI LEL+Y+ +  APK S + R+LP 
Sbjct: 778 LEHPLVQTGLDLITGSDTGTTCVALLKNKALPAGTIFLELIYLAETTAPKASQLYRYLPP 837

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  GN+LS +V+++SF++QLS VNRH+ASKLV++ Q  +H L    E      
Sbjct: 838 TPVRVLLDKNGNNLSDKVDYDSFDKQLSGVNRHIASKLVNASQTMLHPLFAKGEEFAGEA 897

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
           +  + + A+  M+  L +EL RL ALKAVNP+IR+EE+E L   ++EL+GY+   Q +LD
Sbjct: 898 LETLTQDARARMESQLGAELSRLEALKAVNPSIREEELEHLRNMMQELSGYLGNTQLKLD 957

Query: 960 SLRLIVVAHN 969
           ++RL++V+HN
Sbjct: 958 AIRLVLVSHN 967