Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 490 DSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAA 549
           D++   L   ++ ++ ++ L+       A +L   L E+ GI A  FH G S   R++  
Sbjct: 226 DTKSALLSHLIQTEQWQQALIFIETKHGAAKLVSQL-EKRGIHAEAFHSGRSQAVREQVL 284

Query: 550 AYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
           + F  ++G  Q L+ + + + G +     ++V +DLPF PD    RIGR  R G
Sbjct: 285 SEF--KDGSLQYLVATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAG 336