Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., helicase-related protein from Rhodopseudomonas palustris CGA009

 Score =  147 bits (371), Expect = 4e-39
 Identities = 156/559 (27%), Positives = 240/559 (42%), Gaps = 77/559 (13%)

Query: 155 IPHQLYIAH-EVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQH 213
           +PHQ+   + E+  R   R LLAD+ G GKTI AG++I + +     ER L+V P +L  
Sbjct: 106 LPHQISAVYGEMLPRQPLRFLLADDPGAGKTIMAGLLIKELIARSDLERCLVVAPGSLVE 165

Query: 214 QWLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEA- 272
           QW  E+ ++FNL F I   +  +E  S + NPFE +  ++  LD L ++ +  E+   A 
Sbjct: 166 QWQDELGQKFNLEFDILTRD-MIET-SRSGNPFEDRNRLIVRLDVLARNEELQEKLASAR 223

Query: 273 EWDLLVVDEAHHLE----WHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARL 328
           EWDL++ DEAH +         K ++ YQV + L E    +LL++ATP     E     +
Sbjct: 224 EWDLIICDEAHRMSATYFGGDVKYTKRYQVGQKLGEACRHLLLMSATPHNGKEEDFQLFM 283

Query: 329 RLLDADRFYDYEAFVKEEEQYAPVADAVTAL-------FSGEKLSDE-----AKNKITEL 376
            LLD DRF   E   ++   YA  AD +  L       F G  L  E      K +++EL
Sbjct: 284 ALLDGDRF---EGRFRDGVHYADTADMMRRLTKEELLRFDGRPLFPERRAYTVKYQLSEL 340

Query: 377 ---------------------LSEQD----------VEPLFKALESHASEDEIALARQEL 405
                                 +E D          ++ L + L S  +    +L R+  
Sbjct: 341 EAALYTAVTEYVRTEMNRVQRFAEGDGKKRNNVGFALQILQRRLASSPAAIYQSLKRRR- 399

Query: 406 IDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQY------------TTSMRVA 453
            + L +  G  R+  +  RA   GF   +V+   L+   +Y             T    A
Sbjct: 400 -ERLENELGEARLAAKGRRA---GFAAPDVNADILKNIEEYGQDEIDDLEDLIATGATTA 455

Query: 454 GMLGGKLTPEARAMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIAS 513
             +  +L  E   +K L    +     G ++ W Q +  ++  L         K+++   
Sbjct: 456 ETV-EQLALEVETLKGLETMALGVLRSGLDAKWTQLNRILDDDLMVDADGNRRKLIIFTE 514

Query: 514 RASTALQLEQALREREG--IRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEG 571
              T   L   +R R G      V H G+S  ER K    F Q+     VLI ++   EG
Sbjct: 515 PKDTLHYLVDKVRARLGNPDAVDVIHGGVSREERRKVIERFMQDR-DMLVLIANDAAGEG 573

Query: 572 RNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGL 631
            N Q  + +V +DLP+NP+ +EQR GR+ RIGQ     ++     +T +  +     E L
Sbjct: 574 VNLQRGHLMVNYDLPWNPNKIEQRFGRIHRIGQTEVCHLWNLVAADTREGEVYARLLEKL 633

Query: 632 NAFAETCPTGRAVYDAFAE 650
            A  E    G  VYD   E
Sbjct: 634 EAAREA--LGGRVYDVLGE 650