Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 63.2 bits (152), Expect = 8e-14
 Identities = 113/528 (21%), Positives = 207/528 (39%), Gaps = 67/528 (12%)

Query: 128 LRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEA 187
           L Y A    ++    P R L  +      +Q+       R+   R+L+AD+VG+GKTIEA
Sbjct: 76  LLYNASRLSFRNAAGPFRSLGKLSFRPRSYQMVPLIMALRQKLTRLLIADDVGIGKTIEA 135

Query: 188 GMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEA----D 243
            +I  +       +   ++    L  QW  E+  +F +  ++      V A        +
Sbjct: 136 LLIARELYERKEIKGFAVLCLPHLCDQWQDELKSKFGIQ-AVIIRSGTVSALDRQLRAHE 194

Query: 244 NPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHL---EWHPEKPSREYQVIE 300
           N F    + + S+D+++   +R +  ++   + ++VDEAH         +     Y ++ 
Sbjct: 195 NIFRAFPFQIISIDYIKAGNKR-QVFIDHCPEFIIVDEAHSCAKPAGANQSQQLRYHLLH 253

Query: 301 ALAEQT-PGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTAL 359
            LA +    ++LLTATP   G++  F  L              +K E +   + D+  A+
Sbjct: 254 DLASKVDQHLVLLTATPHS-GKQVEFQSLL-----------GLLKSEFERHSIVDSDPAM 301

Query: 360 FSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVL 419
              E  S   + + +++L   D   +F    S   + +I  A  E+ ++++  +    VL
Sbjct: 302 -KKELASCFIQRRRSDVLQWMDERTVFPQRLSVDKDYQIGQAYGEVFNDILS-YARELVL 359

Query: 420 FRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGK-LTPEARAMKMLYPEEIFQE 478
                +  + +   +   L   + S     + +      K    EA    + YPE     
Sbjct: 360 SNAADSRKQRYSYWDALSLLRGVMSSPAAGISMLEKKARKRQLSEALDEFIDYPEGSENV 419

Query: 479 FEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRAT--VF 536
            + + S       ++N + E V    S K++  A R      LE   + RE +     + 
Sbjct: 420 LDTDFSQDDNLPLQLNSVFE-VSDPESRKLMRYAKRLLELSTLEGDSKAREAVAQVKQLL 478

Query: 537 HEGMSII---ERDKAAAYF---------AQEEGGAQV-LICSEIGSEGRNFQFA------ 577
             G++ I      + A Y           +   G Q+ ++ SE+  E R  + A      
Sbjct: 479 QNGLNPIIFCRYIQTANYLGKICKEYFKGKNYKGLQIEIVTSELNDEMRREKIAEMNVAT 538

Query: 578 --------------------NQLVMFDLPFNPDLLEQRIGRLDRIGQK 605
                               N L+ +DLP+NP+ LEQR GR+DR GQ+
Sbjct: 539 NRLLIATDCLSEGINLQDGFNCLLHYDLPWNPNRLEQREGRIDRFGQR 586