Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 496 LLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQE 555
           L E +K ++  ++LV AS   +   L Q L E+ GI A VFH   +   R +    F  +
Sbjct: 257 LAELIKVRQWRQVLVFASAKRSCDHLAQKL-EKRGISAQVFHGDKAQGARSRVLDGF--K 313

Query: 556 EGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQ 604
            G   VLI ++I + G +      ++ F+LP +P     RIGR  R G+
Sbjct: 314 NGEITVLIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGE 362