Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 506 EKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICS 565
           +++LV +     A +L + L E +GI A   H   S   R KA A F  + G  +VL+ +
Sbjct: 244 QQVLVFSRTKHGANRLAKHL-EAKGITAAAIHGNKSQGARTKALANF--KSGDVRVLVAT 300

Query: 566 EIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
           +I + G +     Q+V FDLP  P+    RIGR  R G
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAG 338