Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., ATP-dependent helicase HepA (RefSeq) from Shewanella loihica PV-4

 Score = 1158 bits (2995), Expect = 0.0
 Identities = 565/969 (58%), Positives = 749/969 (77%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F+LGQRWISDTES+LGLGTV+ L+ R VTLMF A++ENR++AR DAP+TRVI+N GD+
Sbjct: 1   MPFSLGQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDI 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           ++S +GWSL+V ++ E   +  Y G   +T E  V+LRE  L++ IRFNKPQD+LFAGQI
Sbjct: 61  IESHEGWSLKVSEIEEKNQLVIYHGIHTETGEE-VSLRETLLNHNIRFNKPQDRLFAGQI 119

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DR+D F +RY++   +++   S + GL G R GLIPHQ +IAHEVG+R APRVLLADEVG
Sbjct: 120 DRLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVG 179

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAG+IIHQQ+LTGRAERILI+VP+TL+HQWLVEM+RRFNL FS+FDE+RCVEA++
Sbjct: 180 LGKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYA 239

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           + DNPF T+Q V+CSL+ LRK ++R +QAL+A+WDL+VVDEAHHLEW  E+PSR Y+V+E
Sbjct: 240 DHDNPFYTEQLVICSLELLRK-KKRLDQALDADWDLMVVDEAHHLEWTEEEPSRAYRVVE 298

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
           AL+E  PGVLLLTATP+QLG +SHFARLRLLD DRFYDY+AF+KEEE Y  VA A  AL 
Sbjct: 299 ALSEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALA 358

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVL 419
           SG++L DEA   +TELL+E+D+ P  + +E  + ++E    AR EL+  L+DRHGTGRVL
Sbjct: 359 SGKRLPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVL 418

Query: 420 FRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEF 479
           +RN+RA++KGFP R  +  P  +P+QY T+ RV+ M+GG+    A+  + L PE+++Q F
Sbjct: 419 YRNSRASVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGGQTDLTAKVKQALSPEKLYQAF 478

Query: 480 EGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEG 539
           E + +SWW+FD RV+WL++ +K  RS+K+L+IAS+A TAL LE+ALR REGI+ATVFHEG
Sbjct: 479 ESDSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEG 538

Query: 540 MSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRL 599
           MSIIERDKA AYFAQE GGAQ LICSEIGSEGRNFQFA+ LV+FDLP NPDLLEQRIGRL
Sbjct: 539 MSIIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRL 598

Query: 600 DRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAG 659
           DRIGQ  D+++++PYL  T+Q  L  W+ +GLNAF +TCPTG  +++ F+E L+  L   
Sbjct: 599 DRIGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYR 658

Query: 660 GGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             ++   ++  +    K LK  +E GRD+LLE++S+GG+KAQ++ E +A  D DT L+  
Sbjct: 659 DEDKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVENLAARDQDTQLIGS 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
            + L+D IG+ QED GENA+V+ P+EHMM P+YPGLP +G T+TFDR+ ALSR+D+  I+
Sbjct: 719 VIRLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
            EHP+VQ G+DL+ S   GT +V++LKNKALP GTI LEL+Y+ DA AP+ S + R++P 
Sbjct: 779 QEHPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  GN+LS  V +ESF++QLS VNRH+ASKLV++ Q  +H L    E   +  
Sbjct: 839 TPVRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAA 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
           +  + E+A   M Q L +ELERL ALKAVNPNIRDEE+E L  Q+ EL  Y+   Q QLD
Sbjct: 899 MKQLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLD 958

Query: 960 SLRLIVVAH 968
           ++RL++V+H
Sbjct: 959 AVRLVLVSH 967