Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 953 a.a., RNA polymerase-associated protein RapA from Marinobacter adhaerens HP15

 Score =  794 bits (2050), Expect = 0.0
 Identities = 442/982 (45%), Positives = 606/982 (61%), Gaps = 51/982 (5%)

Query: 3   FALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVD 62
           F +GQRW+S +++ LGLG V  +  R VTL F A++E R YA  +AP++R+I+ +G+ ++
Sbjct: 6   FVIGQRWVSHSDTGLGLGIVTDISGRRVTLGFPAADEERTYAIDNAPLSRIIYQLGEEIE 65

Query: 63  SQQGWSLQVEQVVEDQGVYTYLGTR-VDTEESGVALREIFLSNQIRFNKPQDKLFAGQID 121
           +  G    V  V +  GV  Y G    D +E    + E+ L+  + F+ P  +LFAGQ D
Sbjct: 66  TFDGERYTVRAVEDRGGVLLYHGDDGTDLQE----ISEVKLAGSVNFSAPHQRLFAGQFD 121

Query: 122 RMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGL 181
           R   F LR+  L +  +   S  +GL G R   +PHQ+YIAHEV RRHAPRVLLADEVGL
Sbjct: 122 RNGAFRLRFATLQHMNRLRASSAQGLIGARTQHLPHQIYIAHEVARRHAPRVLLADEVGL 181

Query: 182 GKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERC------ 235
           GKTIEAG+I+H Q+ TGRA+R LIVVP++L HQWLVEM+RRFNL FSI D+ R       
Sbjct: 182 GKTIEAGLILHYQLHTGRAKRALIVVPDSLTHQWLVEMLRRFNLRFSIVDQGRYDALKEQ 241

Query: 236 ---VEAF-------SEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHL 285
              V+A         +A NPFE++Q VLCSLDFL+KS++  + AL+A WDL++VDEAHHL
Sbjct: 242 ESDVDALVNHIFGDEDAVNPFESEQLVLCSLDFLKKSQKAQDDALKAHWDLMIVDEAHHL 301

Query: 286 EWHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKE 345
            W PE+ S EY+++E L+  + G+LLLTATPEQ+G  SHFARLRLLD  RF+D E F +E
Sbjct: 302 AWSPEEVSPEYRIVEELSAVSRGLLLLTATPEQVGIASHFARLRLLDPARFHDLETFRRE 361

Query: 346 EEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQEL 405
           E+QY  +   V  L        E   K+      ++++ LF      A ++     RQ +
Sbjct: 362 EQQYEAINSVVRRLQDESSDISEGDQKLLREWLGEELDQLF------AGDNP----RQSV 411

Query: 406 IDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEAR 465
           ID L+DRHGTGRVLFRNTRAAI+GFP R     PL  P+ Y    + +G+ G  LTPE  
Sbjct: 412 IDALLDRHGTGRVLFRNTRAAIQGFPERRPDPEPLPCPAMYEG--QASGIQG--LTPE-- 465

Query: 466 AMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQAL 525
               L PEE           W   D RV WL +K+   R  K++VI + A TA+ LE  L
Sbjct: 466 ---QLVPEE----------QWLADDPRVEWLEKKLIGLRPAKVVVICASAQTAMALEHYL 512

Query: 526 REREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDL 585
           + R GIR+  FHE +S+IERD+AAAYFA  E GAQ LICSEIGSEGRNFQFA+ LV+FDL
Sbjct: 513 QLRAGIRSAAFHEHLSLIERDRAAAYFADTEQGAQALICSEIGSEGRNFQFAHHLVLFDL 572

Query: 586 PFNPDLLEQRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVY 645
           P NPDLLEQRIGRLDRIGQ   ID++VPYL+ TSQ +  RWF EGLNAFAE+C  G AV 
Sbjct: 573 PANPDLLEQRIGRLDRIGQTEAIDIHVPYLSGTSQEVQFRWFHEGLNAFAESCAVGVAVQ 632

Query: 646 DAFAERLIPILAAGGGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAE 705
           +A   +    +  G  +  + ++E SA     LK+ L+ GRD L+E++S   E A+ +  
Sbjct: 633 EALQAQWQQAI-DGDLDVADGLVEASADEATRLKTLLQAGRDALIELNSCRPEVAEDLIA 691

Query: 706 QIAKTDGDTNLVTFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFD 765
            I   + +  +  + +  FD +G+  ED  +++ ++ P E         LP +G T+T+D
Sbjct: 692 AIEDEESEARVRDYMMEAFDILGVDVEDHADHSDILRPGEQYQAGHVAELPEDGITVTWD 751

Query: 766 RDTALSREDMHFISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDA 825
           R  AL RED+ F+SWEHPMV G +D + S G+G  A++ L  KALP GT+L+E ++ V  
Sbjct: 752 RQNALEREDLAFMSWEHPMVTGVMDSVTSSGLGKAALASLSVKALPPGTLLMEALFTVHC 811

Query: 826 QAPKRSGISRFLPVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDV 885
            AP+   ++R+LPVSP+R+L+D  G +LS  +  +  N   S + R  A  +V  ++  V
Sbjct: 812 PAPEALQLTRYLPVSPLRLLVDVNGKELSGALPHDRLNEMCSNIRRRTAQAIVPQIRPQV 871

Query: 886 HRLITASETAVEPRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIK 945
             ++   E   EP +  ++ QA   ++ S   E+ RL AL+ VNP IR+EEI+    Q +
Sbjct: 872 ETMVDHVERLSEPHLEPLKSQALEQLEASFGPEIRRLEALQKVNPAIREEEIDFFRDQFE 931

Query: 946 ELTGYIAQAQYQLDSLRLIVVA 967
                I  A   L+ +R+IV A
Sbjct: 932 AAKEAIGHASLALEGIRVIVTA 953