Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 13/201 (6%)

Query: 491 SRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAA 550
           +++  L+  ++ + +E I++     ++ ++L + L  R G  ++  H  M+   R++A  
Sbjct: 230 NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEAR-GYASSPLHGDMNQQARERAVE 288

Query: 551 YFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDV 610
               + G   +LI +++ + G + +    +V +D+P++ +    RIGR  R G+     +
Sbjct: 289 QL--KNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGR---TGM 343

Query: 611 YVPYLTETSQAILARWFQEGLNAFAE--TCPTGRAVYDAFAERLIPILAAGGGEELEVII 668
            + ++T     +L R  +   N+       P+   V +    RL   LA     +LE + 
Sbjct: 344 AILFVTSREMRML-RTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMR 402

Query: 669 EESAKLNKTLKSQLEVGRDRL 689
           E  A+L +    QLEV  D L
Sbjct: 403 EAVAQLCQ----QLEVDTDLL 419