Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.9 bits (115), Expect = 9e-10
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 496 LLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQE 555
           L++ +K +  +++LV +     A +L ++L + E I A   H   S   R KA A F  +
Sbjct: 234 LIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAE-ISAAAIHGNKSQGARTKALADF--K 290

Query: 556 EGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
            G  +VL+ ++I + G +     Q+V FDLP  P+    RIGR  R G
Sbjct: 291 SGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAG 338