Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 496 LLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQE 555
           L   +K  +  + L+  S  +T   L Q L +R GI A VFH   +   R +    F  +
Sbjct: 244 LAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKR-GISAEVFHGDKAQGARTRVLDGF--K 300

Query: 556 EGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQ 604
            G   VLI ++I + G +      ++ FDLP +P     RIGR  R G+
Sbjct: 301 NGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGE 349