Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., RNA polymerase-associated protein HepA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1167 bits (3018), Expect = 0.0
 Identities = 574/969 (59%), Positives = 752/969 (77%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M FALGQRWISDTES+LGLGTVV ++ R VT++F A+ ENR+++R++AP+TRVI+N GD 
Sbjct: 1   MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           V+S +GWSL VE++ E   +  Y G   +T E  V+LRE  L++ IRFNKPQD+LFAGQI
Sbjct: 61  VESHEGWSLSVEELTEKDDLVVYHGIHSETGEK-VSLRETLLNHNIRFNKPQDRLFAGQI 119

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DR+D F +RY+    ++Q   S + GL G R GLIPHQ++IAHEVGRR+APRVLLADEVG
Sbjct: 120 DRLDRFGIRYQCQLLRHQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVG 179

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAG+IIHQQ+LT RAER+LI+VP+TL+HQWLVEM+RRFNL FS+FDE+RCVEAF+
Sbjct: 180 LGKTIEAGLIIHQQLLTCRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFA 239

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           + DNPF T+Q V+CSL+ LRK ++R +QAL+A+WDLLVVDEAHHLEW  E PSR YQV+E
Sbjct: 240 DHDNPFYTEQLVICSLELLRK-KKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVE 298

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
           AL+E  PGVLLLTATP+QLG ESHFARLRLLD DRFYDY+AF+ EE  Y  VA A  AL 
Sbjct: 299 ALSEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAIAAEALA 358

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVL 419
              KLSD A N +TELLSE+D+ P  + +++   + E+   AR EL+  L+DRHGTGRVL
Sbjct: 359 GESKLSDYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQAARSELLQELLDRHGTGRVL 418

Query: 420 FRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEF 479
           +RN+RA++KGFP R  +  P  +P QY T+ RV  M+GG+ + EA+A + L PE+++QEF
Sbjct: 419 YRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGRKSLEAKAAQALSPEKLYQEF 478

Query: 480 EGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEG 539
           E   +SWW+FD RV+WL+E +K+ RS+K+L+IAS A TAL LE+ALR REGI+ATVFHEG
Sbjct: 479 EDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEG 538

Query: 540 MSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRL 599
           MSIIERDKA AYFAQEEGGAQ LICSEIGSEGRNFQFA+ LV+FDLP NPDLLEQRIGRL
Sbjct: 539 MSIIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRL 598

Query: 600 DRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAG 659
           DRIGQK DI +++PYL +T+Q  L +W+ +GLNAF  TCP G  ++  FAE L+ +L  G
Sbjct: 599 DRIGQKNDIQIHLPYLQDTAQERLLQWYHQGLNAFELTCPGGHILFSEFAEELLNVLVGG 658

Query: 660 GGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             +EL  ++  +    K LK  +E GRD+LLE++S+GG+KA+ I E++A++D DT L+  
Sbjct: 659 DEDELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGS 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
            + L+D IG+ QED+GEN++++ P+EHMM P+YPGL  +G T+TFDRDTALSR+D+  I+
Sbjct: 719 VIRLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
            EHP+VQ G+DL+     GT +V++LKNKALP GT+ LEL+Y+ DA APK S + R+LP 
Sbjct: 779 QEHPLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +PIRIL+D  GNDLS++V++ SF++QLS VNRH+ SKLV++ Q  +H L    E   +  
Sbjct: 839 TPIRILLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQVA 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
           V+ +  QA+  M   L  ELERL +LKAVNPNIR+EE+E L  Q++ELT Y+  +Q QLD
Sbjct: 899 VNELVAQAREKMTSQLTGELERLESLKAVNPNIREEELEYLRNQMQELTTYLDASQLQLD 958

Query: 960 SLRLIVVAH 968
           ++R+++V+H
Sbjct: 959 AIRMVLVSH 967