Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., RNA polymerase-associated protein RapA from Klebsiella michiganensis M5al

 Score = 1244 bits (3220), Expect = 0.0
 Identities = 601/969 (62%), Positives = 770/969 (79%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTES+LGLGTVVALDAR VTL+F A  ENR+YAR+D+P+TRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYARNDSPITRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           + S +GW LQV++V E+ G+  Y GTR+DT+E+ V LRE+ L +++ F+KPQD+LFAGQI
Sbjct: 61  ITSHEGWQLQVDEVNEENGLLAYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQI 120

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LRYRA   Q +Q++ P  GL G R  LIPHQL IAH+VGRRHAPRVLLADEVG
Sbjct: 121 DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMI+HQQ+L+G AER+LIVVPETLQHQWLVEM+RRFNL FS+FD+ER  EA  
Sbjct: 181 LGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH 240

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           +A NPFET+Q V+CSLDF+R+S+QR E   +AEWDL+VVDEAHHL W  + PSREYQ IE
Sbjct: 241 DAINPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEDAPSREYQAIE 300

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LAE+ PG+LLLTATPEQLG ESHFARLRLLD +RF+D+  FV+E++ Y PVADAV  L 
Sbjct: 301 QLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVADAVALLL 360

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           +G KL+D   N +++L+ EQD+EPL +A  +++  D+   ARQEL+  LMDRHGT RVLF
Sbjct: 361 AGNKLNDAELNALSDLIGEQDIEPLLQA--ANSDRDDAQAARQELVSMLMDRHGTSRVLF 418

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T+++V+G++G + T E RA  MLYPE+I+QEFE
Sbjct: 419 RNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFE 478

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           G+  +WW FD RV WL+  + + RS+K+LVI ++A+TALQLEQ LREREGIRA VFHEGM
Sbjct: 479 GDTGTWWNFDPRVEWLMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGM 538

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SIIERD+AAA+FA+E+ GAQVL+CSEIGSEGRNFQFA+ LVMFDLPFNPDLLEQRIGRLD
Sbjct: 539 SIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLD 598

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG 660
           RIGQ  DI ++VPYL  T+Q++L RW+ EGL+AF  TCPTGR VYD+    LI  LAA  
Sbjct: 599 RIGQAHDIQIHVPYLERTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHNELINYLAAPE 658

Query: 661 GEE-LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             +  + +I+   + +  LK+QLE GRDRLLE+HSNGGEKAQQ+AE I + D DT+L+ F
Sbjct: 659 NTDGFDELIKACRQQHDALKAQLEQGRDRLLEIHSNGGEKAQQLAESIEEQDDDTSLIAF 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           +++LFD +G++Q+DRGEN +V+TP++HM+VP +PGLP +G TITF+RD ALSRED  FI+
Sbjct: 719 SMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP++  G+DL++S   G+  +SLLKNKALPVGT+LLEL+YVV+AQAPK   ++RFLP 
Sbjct: 779 WEHPLIINGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKHLQLNRFLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  GN+L+ QVEFESFNRQLS VNRH  SKLV++VQ DVH ++   E  V   
Sbjct: 839 TPVRMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEGQVAKA 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
             A+ + A+++    L +EL RL AL+AVNPNIRD+E+  ++   +++   +AQA ++LD
Sbjct: 899 AQALIDAARKEADDKLTAELSRLEALRAVNPNIRDDELAAIESNRQQVMDALAQAGWRLD 958

Query: 960 SLRLIVVAH 968
           +LRLIVV H
Sbjct: 959 ALRLIVVTH 967