Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1046 a.a., RNA polymerase-associated protein RapA from Enterobacter sp. TBS_079

 Score =  123 bits (309), Expect = 6e-32
 Identities = 214/932 (22%), Positives = 377/932 (40%), Gaps = 207/932 (22%)

Query: 173  VLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFD- 231
            +L+AD+VGLGKTIEAG+II + +L  RA  +LIV P +LQ +W +EM+ +F L F I D 
Sbjct: 142  LLIADDVGLGKTIEAGLIIQEMLLRHRARTVLIVCPASLQEKWRLEMLEKFGLEFHIVDT 201

Query: 232  -------EERCVEAFSEADNPFETQQYVLCSLDF------LRKSRQ--RFEQALEAEWDL 276
                    ER + A     NP+ +   ++ S+D+      LR  R     + +   ++D+
Sbjct: 202  SYIKKLRRERGIHA-----NPWTSHPRLITSMDWAKSGEGLRAMRDVLPLKVSYPRKFDM 256

Query: 277  LVVDEAHHLE----WHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLD 332
            LV+DEAH++           S+  + I +++      L LTATP     ES  + L LLD
Sbjct: 257  LVIDEAHNIAPVGGASYAMESQRTRFIRSISPHFQHRLFLTATPHNGYTESFTSLLELLD 316

Query: 333  ADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALES- 391
              RF              P    +  +      SD   ++   L +++ +  L  A  + 
Sbjct: 317  DQRF---------ARNVLPDEKLLNQVMVRRLKSDLVDSEGKLLYAQRKLVALSVAYSAQ 367

Query: 392  ----HASEDEIALARQELIDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYT 447
                H   +E   +R++  +      GT         A +     + +   P    S  T
Sbjct: 368  ERSIHDQLNEYCKSREQGAEKANKIFGT---------AFVNQLLKKRLFSSPAAFAS--T 416

Query: 448  TSMRVAGMLGGKLTPEARAM-------KMLYPEEIF---QEFEG------EESS------ 485
                +A +  GK T +  AM        +L  EE +   QE E       EE+S      
Sbjct: 417  LEKHIATLTHGKQTSDKNAMAERILRKAILRAEEDYADDQEVENAQAEAVEEASRHTLPL 476

Query: 486  -------------WWQF-----DSRVNWLLE------KVKAKRSEKILVIASRASTALQL 521
                         W Q      DS+   +L+      K   + +E+ +++ +   T  Q 
Sbjct: 477  TPNQKQILNDLRQWAQIAKNQVDSKAKGVLDWIDTNLKTHGQWNEQRVILFTEYRTTHQW 536

Query: 522  EQALREREGI---RATVFHEGMSIIERDKAAAYF--AQEEGGAQVLICSEIGSEGRNFQ- 575
               +    G+   R  + H  M   ER+K  A F  + +    ++L+ ++  SEG + Q 
Sbjct: 537  MHEILASHGLGGERLAILHGSMPQDEREKVKAAFQTSPKTSPVRILLATDAASEGIDLQN 596

Query: 576  FANQLVMFDLPFNPDLLEQRIGRLDRIGQK-RDIDVYVPYLTETSQAILARWFQEGLNAF 634
            + N L+  ++P+NP+++EQR GR+DR GQ+ +++ ++ P     +  +      + +   
Sbjct: 597  YCNYLIHLEIPYNPNVMEQRNGRIDRHGQRQKEVVIWHPVDGSENGDLRIGGHGDDILRA 656

Query: 635  AETCPTGRAVYDAFAERLIPILAA---GGGEELEVIIEES--AKLNKTLKSQLEVGRDRL 689
                 + RA   +    + P ++    G  +E++  + ES  AK  + + ++ E+ ++R+
Sbjct: 657  LRKLESMRADMGSVNPVIAPQMSGLIEGSIKEIDTRLAESRIAKTKRFITAEREL-KERI 715

Query: 690  LEMHSNGGEKAQQIAEQIAKTDGDTNLVTFALSLFDAIGLHQEDRGE----NALVVTPAE 745
             ++H           +++     D +L    + +    GL    R          + P  
Sbjct: 716  AKLH-----------DRLLSAKHDFHLTPEHIHMAVNTGLTLAGRPNLEHFELPDIPPGS 764

Query: 746  HMMVPSYPGL----------PY--EGATITFDRDTALSREDMHFISWEHPMVQGGIDLLM 793
               +P+  G           PY  +   ITFD   A  R+D+  +   H +VQ  + LL 
Sbjct: 765  VFKMPALSGTWARCLEGLQHPYTQQIRPITFDHSVAKGRDDVVLVHLNHRLVQMCLRLLR 824

Query: 794  SE-------------GVGTCAVSLLKNKALPVGTILL-----------ELV----YVVDA 825
            +E              V +   +LL + A+ V + L+           EL     Y+ D 
Sbjct: 825  AEVWAHDDVKNLHRVTVRSVPDTLLDSPAVAVVSRLVIIGGNHHRLHEELTVAGGYLGDK 884

Query: 826  QAPKRSGISR--------------FLPVSPIRILMDARGNDLSSQVEFESFNRQLSPV-- 869
               +  G+++              F      R+  +   N +   VE  S +R  +    
Sbjct: 885  AFRREEGVNKIQQWLEQAKSLTTEFALFDAFRVRFNRAQNSILQSVEARSKDRLQNLTNT 944

Query: 870  -----NRHLASKLVSSVQHDVHRLITASETAVEPRVSAIREQAQRDMQQSLNSELER--- 921
                 NR LA   +S+V +++ R ITA E A +          Q+ MQ SL SE ER   
Sbjct: 945  LQTRKNRELAD--ISNVLNELERTITA-ELAKD----------QQPMQFSLFSEDERIQL 991

Query: 922  ------LLALKAVNPNIRDEEIEVLDQQIKEL 947
                  L A  A  P  R++EI+ ++ +  ++
Sbjct: 992  RRDNAALEARLARIPTEREQEIQAIETRYTKI 1023