Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 49.3 bits (116), Expect = 7e-10
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 483 ESSWWQFDS--RVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           E +W++     RV+ +     A    K +V  +      +L  AL++R GI A   H  +
Sbjct: 220 EQAWFEVRPFRRVDAVCRIFDAYIPRKAIVFRATKQGVDELAAALQQR-GILADALHGDL 278

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           +  +R++  + F    GG  VL+ +++ + G +    + ++ FDLP +P+    RIGR  
Sbjct: 279 NQTQRERVMSRF--RAGGISVLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTG 336

Query: 601 RIGQ 604
           R G+
Sbjct: 337 RAGR 340