Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., DEAD/DEAH box helicase from Ralstonia sp. UNC404CL21Col

 Score = 49.7 bits (117), Expect = 5e-10
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 493 VNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYF 552
           V+ L ++ +     + +V ++      +L +AL EREGI A   H   +  ER +    F
Sbjct: 256 VHLLKQRAEQGLPRQCIVFSNSKIGCSRLARAL-EREGINANAIHGDKTQTERMQTLEAF 314

Query: 553 AQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRD-IDVY 611
            Q  G   VL+ +++ + G +      ++ FDLPFN +    RIGR  R G   D + ++
Sbjct: 315 KQ--GTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 372

Query: 612 VP 613
            P
Sbjct: 373 AP 374