Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1154 a.a., Superfamily II DNA or RNA helicase, SNF2 family from Paraburkholderia bryophila 376MFSha3.1

 Score = 47.8 bits (112), Expect = 4e-09
 Identities = 104/464 (22%), Positives = 187/464 (40%), Gaps = 73/464 (15%)

Query: 174  LLADEVGLGKTIEAGMIIHQQVLTGRAER-ILIVVPETLQHQWLVEMMRRF--NLHFSIF 230
            +LAD++GLGKT++    I  +   GR +R  LIVVP TL H W  E  RRF   L   + 
Sbjct: 682  VLADDMGLGKTVQTLAHILAEKEAGRLDRPALIVVPTTLVHNWR-EEARRFAPELKVLVL 740

Query: 231  DEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPE 290
            +  +  + F +        + +L +   L + +   +   E E+ LL++DEA +++    
Sbjct: 741  NGPQRKQRFDQIGE----HELILTTYALLWRDQ---KVLAEHEYHLLILDEAQYVKNATT 793

Query: 291  KPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYA 350
            K ++  + + A        L LT TP     E+H   L    +   +    F+  ++ + 
Sbjct: 794  KAAQAIRGLNARHR-----LCLTGTP----LENHLGELW---SQFDFLLPGFLGSQKDFT 841

Query: 351  -----PVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIA--LARQ 403
                 P+          EK +D  +      L  + + P          +DE+A  L  +
Sbjct: 842  RRWRNPI----------EKNNDGVRRS----LLARRIRPFM----LRRRKDEVAKELPAK 883

Query: 404  ELIDNLMDRHGTGRVLF--------RNTRAAIKGFPVRNVHLLPLEI---PSQYTTSMRV 452
              I   +D  G  R L+           RAA+    +   H++ L+      Q     R+
Sbjct: 884  TTIVCSVDLEGAQRDLYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRL 943

Query: 453  AGML----GGKLTPEARAMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKI 508
               L     G    E  A K   P++  +   G  S+  + D  ++ L E ++  R  ++
Sbjct: 944  VRTLTATGEGVERSEDAAAKPASPDKAEKGARGMRSA--KLDLLLSMLPELIEEGR--RV 999

Query: 509  LVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQV-LICSEI 567
            L+ +        + +AL E     A + +  ++    D+       ++G   + LI  + 
Sbjct: 1000 LLFSQFTGMLALIAEALDE-----AAIPYVILTGDTTDRITPVERFQQGEVPLFLISLKA 1054

Query: 568  GSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVY 611
            G  G N   A+ ++ +D  +NP    Q   R  R+GQ + + VY
Sbjct: 1055 GGVGLNLTAADTVIHYDPWWNPAAENQATDRAHRLGQDKPVFVY 1098