Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1157 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 49.7 bits (117), Expect = 1e-09
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 505 SEKILVIASRASTALQLEQALREREGIRATVF-----HEGMSIIERDKAAAYFAQEEGGA 559
           S K+++ +    T   L +A++ + G +A V       E    IE +  A Y    +   
Sbjct: 776 SGKLVIFSEAIDTVQSLARAVKAK-GYKALVITAANRDEMEHTIEENFDANYEGVWKDDY 834

Query: 560 QVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVYV 612
            V+I +E+ +EG N   AN ++ +D P+N   L QRIGR++RIG K    VYV
Sbjct: 835 NVIITTEVLAEGVNLHRANVILNYDTPWNSTRLMQRIGRVNRIGSKEPF-VYV 886



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 174 LLADEVGLGKTIEAGMIIHQQVLT----GRAERILIVVPETLQHQW 215
           +LAD VGLGKTI   +II + +      GR  ++L++ P  +Q  W
Sbjct: 297 MLADVVGLGKTIIGTLIIKRFLSVPEDDGRERKVLVITPPAIQSGW 342