Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., helicase from Burkholderia phytofirmans PsJN

 Score = 45.4 bits (106), Expect = 2e-08
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 20/158 (12%)

Query: 174 LLADEVGLGKTIEAGMIIHQQVLTGRAER-ILIVVPETLQHQWLVEMMRRF--NLHFSIF 230
           +LAD++GLGKT++    I  +   GR  R  LIVVP TL H W  E  RRF   L   + 
Sbjct: 687 VLADDMGLGKTVQTLAHILAEKEAGRLTRPALIVVPTTLVHNWR-EEARRFAPELKVLLL 745

Query: 231 DEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPE 290
           +  +  E F +        + +L +   L + +   +   E E+ LL++DEA +++    
Sbjct: 746 NGPQRKERFEQIGE----HELILTTYALLWRDQ---KVLAEHEYHLLILDEAQYVKNATT 798

Query: 291 KPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARL 328
           K ++  + + A        L LT TP     E+H   L
Sbjct: 799 KAAQAIRGLRARHR-----LCLTGTP----LENHLGEL 827



 Score = 30.0 bits (66), Expect = 0.001
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 562  LICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVY 611
            LI  + G  G N   A+ ++ +D  +NP    Q   R  R+GQ + + VY
Sbjct: 1050 LISLKAGGVGLNLTAADTVIHYDPWWNPAAENQATDRAHRLGQDKPVFVY 1099