Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score = 48.9 bits (115), Expect = 8e-10
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 496 LLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQE 555
           +++ ++ +  ++++V  +    A +L ++L ER+G+ AT  H   +  ER +A   F  +
Sbjct: 248 VVQLIRERGLKQVIVFCNSKIGASRLARSL-ERDGVVATAIHGDRTQNERMQALDAF--K 304

Query: 556 EGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRD 607
            G  + L+ +++ + G +      ++ FDLPFN +    RIGR  R G   D
Sbjct: 305 RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGD 356