Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 496 LLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSIIERDKAAAYFAQE 555
           L++ +K +  +++LV +     A +L ++L + E I A   H   S   R KA A F  +
Sbjct: 234 LIQLIKQEDWQQVLVFSRTKHGANRLAKSLIQAE-ISAAAIHGNKSQGARTKALADF--K 290

Query: 556 EGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
            G  +VL+ ++I + G +     Q+V FDLP  P+    RIGR  R G
Sbjct: 291 SGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAG 338