Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  105 bits (261), Expect = 1e-27
 Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 29/232 (12%)

Query: 10  KDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYD-SMWARLVDYCPDV------KVVHR 62
           +D  +D++YEDE I+  NKP+GL+  P     H D ++   L+ + PD+       +VHR
Sbjct: 65  QDIALDIVYEDEDILVINKPAGLVVHPA--AGHADGTLLNALLHHVPDIINVPRAGIVHR 122

Query: 63  LDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNR 122
           LD  T+GL++ AK    ++ L  Q Q R   +IY   V GV+    G++N P+      R
Sbjct: 123 LDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAG-GKINAPIGRHGQQR 181

Query: 123 PKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA- 181
            +  V  E G+ +++ Y+V++R    T VR+   TGR+HQ+RVHM  +  P+VGD  Y  
Sbjct: 182 QRMAV-MEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 240

Query: 182 ----PP-------EAVEFADRLQLHAAELCFYHP----RSHWLRTLFVPCDF 218
               PP       E+++   R  LHA  L   HP    R  W   L  P DF
Sbjct: 241 RFRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPL--PDDF 290