Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (256), Expect = 5e-27
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 29/232 (12%)

Query: 10  KDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYD-SMWARLVDYCPDV------KVVHR 62
           +D  +D+IYED+ I+  NKP+GL+  P     H D ++   L+ + PD+       +VHR
Sbjct: 79  QDIELDIIYEDDQILVINKPAGLVVHPA--AGHADGTLLNALLHHVPDIINVPRAGIVHR 136

Query: 63  LDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNR 122
           LD  T+GL++ AK    ++ L  Q Q R   +IY   V GV+    G+++ P+      R
Sbjct: 137 LDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAG-GKIDAPIGRHGQQR 195

Query: 123 PKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA- 181
            +  V  E G+ +++ Y+V++R    T VR+   TGR+HQ+RVHM  + +P+VGD  Y  
Sbjct: 196 QRMAV-MEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254

Query: 182 ----PP-------EAVEFADRLQLHAAELCFYHP----RSHWLRTLFVPCDF 218
               PP       ++++   R  LHA  L   HP    R  W   L  P DF
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPL--PDDF 304