Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  143 bits (361), Expect = 6e-39
 Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRLDMSTSGL 70
           + ++YED  ++A  KP+GLLSVPG       S    L    PD+    VVHRLD +TSG+
Sbjct: 338 LPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCVVHRLDQATSGI 397

Query: 71  ILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVCFE 130
           +L A+ +  + AL +QF+ R  HK+Y A + G  +   G ++LPL  DW  RP Q V  +
Sbjct: 398 LLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTIDLPLRPDWTRRPYQLVDRD 457

Query: 131 EGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHM---QSLGHPIVGDDLYAPPEAVE 187
            GR +LT Y+ + +      + L PITGR+HQLRVHM   + LG PI+GDDLY      +
Sbjct: 458 RGRPALTYYRCIDQTGDRCRMELEPITGRTHQLRVHMAHPEGLGQPILGDDLYG-----Q 512

Query: 188 FADRLQLHAAELCFYHP 204
            +DRL LHA  + F HP
Sbjct: 513 SSDRLYLHARSIRFRHP 529