Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  104 bits (259), Expect = 2e-27
 Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK------VVHRLDMST 67
           +D++YED+HI+  NK +GL+  PG        M A L+ +CP+++      ++HRLD  T
Sbjct: 84  LDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNA-LLHHCPEIEHVPRAGIIHRLDKDT 142

Query: 68  SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
           +GL++ AK    ++ L    Q R   + Y A V G M    G V+ P+    P +     
Sbjct: 143 TGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMTAG-GTVDAPIGRH-PTKRTHMA 200

Query: 128 CFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA----PP 183
               GR S+T Y+V ++    T +RL   TGR+HQ+RVHM  +GH +VGD +Y     PP
Sbjct: 201 VHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMAHIGHVLVGDPVYGGRPKPP 260

Query: 184 --------EAVEFADRLQLHAAELCFYHP 204
                   E ++   R  LHA  L   HP
Sbjct: 261 KNASPEFFEVLKNFTRQALHAVRLELAHP 289