Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  196 bits (499), Expect = 3e-55
 Identities = 106/213 (49%), Positives = 136/213 (63%), Gaps = 6/213 (2%)

Query: 1   MAMTEYNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV 60
           M + +Y PP  PW+D+ Y D  +I  NKPSGLLS PG     +DS   RL    P+  +V
Sbjct: 1   MEIFDYRPPAVPWLDIRYIDRDLIIINKPSGLLSNPGMAAHTHDSAITRLCRLYPEAILV 60

Query: 61  HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWP 120
           HRLD +TSG+++FA+ K  ES LK QFQ R T K Y A+V G++EQ+EG ++LPL  D  
Sbjct: 61  HRLDCATSGIMVFARSKKAESNLKTQFQNRDTEKRYLAQVAGIIEQDEGTIDLPLGKDRS 120

Query: 121 NRPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLY 180
           N P QKV   EGR ++T Y+V+ R E +T+V L P TGR+HQLRVHM SLGHPI+GDD Y
Sbjct: 121 NPPWQKVDMAEGRPAVTHYRVLARRENSTLVALEPETGRTHQLRVHMLSLGHPILGDDFY 180

Query: 181 APPE------AVEFADRLQLHAAELCFYHPRSH 207
              +        E + RL LHA  L F HP S+
Sbjct: 181 GRTQEFGQGTVEEASPRLCLHAERLSFKHPWSN 213